Genomics & Informatics誌の2019年6月号が第5回Biomedical Linked Annotation Hackathon (BLAH5)の特集号として出版されました。
2019. 07. 01 /
Genomics & Informatics誌の2019年6月号が第5回Biomedical Linked Annotation Hackathon (BLAH5)の特集号として出版されました。
BLAH5は当センターの主催で2019年2月DBCLS柏ラボで開催された生命科学テキストマイニングのハッカソンです。
本特集号はエディトリアル１篇、ミニーレビュー２篇、アプリケーションノート７篇で構成され、オープンアクセスで、下記のURLからご覧頂けます。
- Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining, Jin-Dong Kim, Kevin Bretonnel Cohen, Nigel Collier, Zhiyong Lu, Fabio Rinaldi, DOI: https://doi.org/10.5808/GI.2019.17.2.e12
- Resources for assigning MeSH IDs to Japanese medical terms, Yuka Tateisi, DOI: https://doi.org/10.5808/GI.2019.17.2.e16
- A review of drug knowledge discovery using BioNLP and tensor or matrix decomposition, Mina Gachloo, Yuxing Wang, Jingbo Xia, DOI: https://doi.org/10.5808/GI.2019.17.2.e18
- Fully connecting the Observational Health Data Science and Informatics (OHDSI) initiative with the world of linked open data, Juan M. Banda, DOI: https://doi.org/10.5808/GI.2019.17.2.e13
- Biotea-2-Bioschemas, facilitating structured markup for semantically annotated scholarly publications, Leyla Garcia, Olga Giraldo, Alexander Garcia, Dietrich Rebholz-Schuhmann, DOI: https://doi.org/10.5808/GI.2019.17.2.e14
- PharmacoNER Tagger: a deep learning-based tool for automatically finding chemicals and drugs in Spanish medical texts, Jordi Armengol-Estapé, Felipe Soares, Montserrat Marimon, Martin Krallinger, DOI: https://doi.org/10.5808/GI.2019.17.2.e15
- OryzaGP: rice gene and protein dataset for named-entity recognition, Pierre Larmande, Huy Do, Yue Wang, DOI: https://doi.org/10.5808/GI.2019.17.2.e17
- Towards cross-platform interoperability for machine-assisted text annotation Richard Eckart de Castilho, Nancy Ide, Jin-Dong Kim, Jan-Christoph Klie, Keith Suderman, DOI: https://doi.org/10.5808/GI.2019.17.2.e19
- Improving methods for normalizing biomedical text entities with concepts from an ontology with (almost) no training data at BLAH5 the CONTES, Arnaud Ferré, Mouhamadou Ba, Robert Bossy, DOI: https://doi.org/10.5808/GI.2019.17.2.e20
- Improving spaCy dependency annotation and PoS tagging web service using independent NER services, Nico Colic, Fabio Rinaldi, DOI: https://doi.org/10.5808/GI.2019.17.2.e21